Detailed information of SNP:



SNP ID: sf0825236902(Gbrowse)

Chromosome: chr08

Position: 25236902
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 93.66% 6.34%
All Indica799 91.11% 8.89%
All Japonica497 100.00% 0.00%
Aus67 74.63% 25.37%
Indica I375 93.33% 6.67%
Indica II213 99.06% 0.94%
Indica Intermediate211 79.15% 20.85%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0825236902 C->T INTERGENIC None