Detailed information of SNP:
|
SNP ID:
sf0825243466(Gbrowse)
Chromosome: chr08 Position: 25243466 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 95.49% | 4.51% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825243466 | G->T | LOC_Os08g39850(LOC_Os08g39850.2) | INTRON |
| sf0825243466 | G->T | LOC_Os08g39850(LOC_Os08g39850.4) | INTRON |
| sf0825243466 | G->T | LOC_Os08g39850(LOC_Os08g39850.1) | INTRON |