Detailed information of SNP:
|
SNP ID:
sf0825261266(Gbrowse)
Chromosome: chr08 Position: 25261266 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 91.67% | 8.33% |
| All Indica | 796 | 91.83% | 8.17% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 209 | 84.69% | 15.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825261266 | A->G | LOC_Os08g39870(LOC_Os08g39870.1) | INTRON |