Detailed information of SNP:
|
SNP ID:
sf0825285651(Gbrowse)
Chromosome: chr08 Position: 25285651 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1308 | 54.51% | 45.49% |
| All Indica | 735 | 85.99% | 14.01% |
| All Japonica | 457 | 11.60% | 88.40% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 345 | 88.41% | 11.59% |
| Indica II | 190 | 85.79% | 14.21% |
| Indica Intermediate | 200 | 82.00% | 18.00% |
| Temperate Japonica | 320 | 7.50% | 92.50% |
| Tropical Japonica | 81 | 24.69% | 75.31% |
| Japonica Intermediate | 56 | 16.07% | 83.93% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 36 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825285651 | G->A | INTERGENIC | None |