Detailed information of SNP:
|
SNP ID:
sf0825299815(Gbrowse)
Chromosome: chr08 Position: 25299815 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 66.55% | 33.45% |
| All Indica | 787 | 95.43% | 4.57% |
| All Japonica | 473 | 16.28% | 83.72% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 207 | 97.58% | 2.42% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 320 | 12.81% | 87.19% |
| Tropical Japonica | 88 | 31.82% | 68.18% |
| Japonica Intermediate | 65 | 12.31% | 87.69% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825299815 | A->C | INTERGENIC | None |