Detailed information of SNP:
|
SNP ID:
sf0825337788(Gbrowse)
Chromosome: chr08 Position: 25337788 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.42% | 49.58% |
| All Indica | 797 | 23.71% | 76.29% |
| All Japonica | 496 | 86.69% | 13.31% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 24.33% | 75.67% |
| Indica II | 213 | 13.15% | 86.85% |
| Indica Intermediate | 210 | 33.33% | 66.67% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825337788 | C->T | INTERGENIC | None |