Detailed information of SNP:
|
SNP ID:
sf0825396767(Gbrowse)
Chromosome: chr08 Position: 25396767 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 78.95% | 21.05% |
| All Indica | 796 | 72.61% | 27.39% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 208 | 52.40% | 47.60% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825396767 | C->A | LOC_Os08g40130(LOC_Os08g40130.1) | INTRON |