Detailed information of SNP:
|
SNP ID:
sf0825434101(Gbrowse)
Chromosome: chr08 Position: 25434101 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 60.50% | 39.50% |
| All Indica | 796 | 56.91% | 43.09% |
| All Japonica | 492 | 74.39% | 25.61% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 373 | 69.44% | 30.56% |
| Indica II | 213 | 56.81% | 43.19% |
| Indica Intermediate | 210 | 34.76% | 65.24% |
| Temperate Japonica | 333 | 88.29% | 11.71% |
| Tropical Japonica | 92 | 29.35% | 70.65% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825434101 | A->C | INTERGENIC | None |