Detailed information of SNP:
|
SNP ID:
sf0825490197(Gbrowse)
Chromosome: chr08 Position: 25490197 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 84.87% | 15.13% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 492 | 58.94% | 41.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 46.83% | 53.17% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 64.18% | 35.82% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825490197 | G->T | INTERGENIC | None |