Detailed information of SNP:
|
SNP ID:
sf0825499835(Gbrowse)
Chromosome: chr08 Position: 25499835 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 73.18% | 26.82% |
| All Indica | 793 | 61.29% | 38.71% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 371 | 60.11% | 39.89% |
| Indica II | 212 | 50.47% | 49.53% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825499835 | C->T | INTERGENIC | None |