Detailed information of SNP:
|
SNP ID:
sf0825500783(Gbrowse)
Chromosome: chr08 Position: 25500783 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 94.45% | 5.55% |
| All Indica | 757 | 93.00% | 7.00% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 45 | 62.22% | 37.78% |
| Indica I | 365 | 96.99% | 3.01% |
| Indica II | 194 | 87.63% | 12.37% |
| Indica Intermediate | 198 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825500783 | A->T | INTERGENIC | None |