Detailed information of SNP:
|
SNP ID:
sf0825502049(Gbrowse)
Chromosome: chr08 Position: 25502049 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 95.47% | 4.53% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 476 | 87.61% | 12.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 98.78% | 1.22% |
| Tropical Japonica | 84 | 50.00% | 50.00% |
| Japonica Intermediate | 65 | 80.00% | 20.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825502049 | C->G | INTERGENIC | None |