Detailed information of SNP:
|
SNP ID:
sf0825502526(Gbrowse)
Chromosome: chr08 Position: 25502526 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 94.81% | 5.19% |
| All Indica | 762 | 92.91% | 7.09% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 57 | 82.46% | 17.54% |
| Indica I | 359 | 95.54% | 4.46% |
| Indica II | 201 | 90.55% | 9.45% |
| Indica Intermediate | 202 | 90.59% | 9.41% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825502526 | G->A | INTERGENIC | None |