Detailed information of SNP:
|
SNP ID:
sf0825505557(Gbrowse)
Chromosome: chr08 Position: 25505557 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 83.33% | 16.67% |
| All Indica | 762 | 78.48% | 21.52% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 61 | 22.95% | 77.05% |
| Indica I | 359 | 83.29% | 16.71% |
| Indica II | 201 | 73.63% | 26.37% |
| Indica Intermediate | 202 | 74.75% | 25.25% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825505557 | G->A | LOC_Os08g40290(LOC_Os08g40290.1) | Non-Synonymous SNP |