Detailed information of SNP:
|
SNP ID:
sf0825507427(Gbrowse)
Chromosome: chr08 Position: 25507427 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1280 | 58.20% | 41.80% |
| All Indica | 666 | 31.83% | 68.17% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 7.81% | 92.19% |
| Indica I | 312 | 41.67% | 58.33% |
| Indica II | 174 | 20.69% | 79.31% |
| Indica Intermediate | 180 | 25.56% | 74.44% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825507427 | C->T | LOC_Os08g40290(LOC_Os08g40290.1) | UTR_5_PRIME |