Detailed information of SNP:
|
SNP ID:
sf0825538448(Gbrowse)
Chromosome: chr08 Position: 25538448 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 57.12% | 42.88% |
| All Indica | 744 | 70.83% | 29.17% |
| All Japonica | 496 | 43.75% | 56.25% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 358 | 64.53% | 35.47% |
| Indica II | 189 | 78.84% | 21.16% |
| Indica Intermediate | 197 | 74.62% | 25.38% |
| Temperate Japonica | 334 | 55.39% | 44.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825538448 | T->C | LOC_Os08g40340(LOC_Os08g40340.1) | Non-Synonymous SNP |