Detailed information of SNP:
|
SNP ID:
sf0825539056(Gbrowse)
Chromosome: chr08 Position: 25539056 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 92.01% | 7.99% |
| All Indica | 770 | 86.62% | 13.38% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 362 | 89.50% | 10.50% |
| Indica II | 206 | 86.89% | 13.11% |
| Indica Intermediate | 202 | 81.19% | 18.81% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825539056 | T->C | LOC_Os08g40340(LOC_Os08g40340.1) | Non-Synonymous SNP |