Detailed information of SNP:
|
SNP ID:
sf0825539169(Gbrowse)
Chromosome: chr08 Position: 25539169 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 93.55% | 6.45% |
| All Indica | 790 | 88.99% | 11.01% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 90.57% | 9.43% |
| Indica II | 210 | 89.05% | 10.95% |
| Indica Intermediate | 209 | 86.12% | 13.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825539169 | C->T | LOC_Os08g40340(LOC_Os08g40340.1) | Synonymous |