Detailed information of SNP:
|
SNP ID:
sf0825539835(Gbrowse)
Chromosome: chr08 Position: 25539835 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 69.23% | 30.77% |
| All Indica | 745 | 55.57% | 44.43% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 356 | 69.10% | 30.90% |
| Indica II | 197 | 46.70% | 53.30% |
| Indica Intermediate | 192 | 39.58% | 60.42% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825539835 | A->G | INTERGENIC | None |