Detailed information of SNP:
|
SNP ID:
sf0825546937(Gbrowse)
Chromosome: chr08 Position: 25546937 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 87.32% | 12.68% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 475 | 65.47% | 34.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 318 | 55.35% | 44.65% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 63 | 68.25% | 31.75% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825546937 | G->A | INTERGENIC | None |