Detailed information of SNP:
|
SNP ID:
sf0825556736(Gbrowse)
Chromosome: chr08 Position: 25556736 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 60.66% | 39.34% |
| All Indica | 768 | 40.76% | 59.24% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 364 | 54.12% | 45.88% |
| Indica II | 201 | 29.85% | 70.15% |
| Indica Intermediate | 203 | 27.59% | 72.41% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825556736 | G->A | LOC_Os08g40370(LOC_Os08g40370.1) | Synonymous |