Detailed information of SNP:
|
SNP ID:
sf0825562514(Gbrowse)
Chromosome: chr08 Position: 25562514 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1338 | 96.71% | 3.29% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 422 | 90.76% | 9.24% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 290 | 98.97% | 1.03% |
| Tropical Japonica | 76 | 59.21% | 40.79% |
| Japonica Intermediate | 56 | 91.07% | 8.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825562514 | C->G | LOC_Os08g40380(LOC_Os08g40380.1) | Non-Synonymous SNP |