Detailed information of SNP:
|
SNP ID:
sf0825567082(Gbrowse)
Chromosome: chr08 Position: 25567082 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 91.47% | 8.53% |
| All Indica | 782 | 85.68% | 14.32% |
| All Japonica | 491 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 77.07% | 22.93% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825567082 | G->A | INTERGENIC | None |