Detailed information of SNP:
|
SNP ID:
sf0825594038(Gbrowse)
Chromosome: chr08 Position: 25594038 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 78.70% | 21.30% |
| All Indica | 798 | 62.91% | 37.09% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 60.80% | 39.20% |
| Indica II | 213 | 53.05% | 46.95% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825594038 | G->A | LOC_Os08g40450(LOC_Os08g40450.1) | UTR_5_PRIME |