Detailed information of SNP:
|
SNP ID:
sf0825600707(Gbrowse)
Chromosome: chr08 Position: 25600707 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 63.89% | 36.11% |
| All Indica | 796 | 77.01% | 22.99% |
| All Japonica | 453 | 35.76% | 64.24% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 68.00% | 32.00% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 297 | 49.49% | 50.51% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 64 | 20.31% | 79.69% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825600707 | C->T | LOC_Os08g40470(LOC_Os08g40470.1) | Non-Synonymous SNP |