Detailed information of SNP:
|
SNP ID:
sf0825625355(Gbrowse)
Chromosome: chr08 Position: 25625355 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.35% | 49.65% |
| All Indica | 798 | 23.81% | 76.19% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 32.00% | 68.00% |
| Indica II | 212 | 13.68% | 86.32% |
| Indica Intermediate | 211 | 19.43% | 80.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825625355 | T->G | INTERGENIC | None |