Detailed information of SNP:



SNP ID: sf0825700471(Gbrowse)

Chromosome: chr08

Position: 25700471
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1419 96.55% 3.45%
All Indica799 100.00% 0.00%
All Japonica497 90.14% 9.86%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 98.81% 1.19%
Tropical Japonica94 63.83% 36.17%
Japonica Intermediate68 83.82% 16.18%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0825700471 A->G LOC_Os08g40610(LOC_Os08g40610.1) INTRON