Detailed information of SNP:
SNP ID:
sf0825718310(Gbrowse)
Chromosome: chr08 Position: 25718310 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 95.20% | 4.80% |
All Indica | 798 | 99.25% | 0.75% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 14.93% | 85.07% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 97.65% | 2.35% |
Indica Intermediate | 210 | 99.52% | 0.48% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 85.71% | 14.29% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0825718310 | G->A | LOC_Os08g40630(LOC_Os08g40630.1) | Synonymous |
sf0825718310 | G->A | LOC_Os08g40630(LOC_Os08g40630.2) | Synonymous |