Detailed information of SNP:
|
SNP ID:
sf0825753225(Gbrowse)
Chromosome: chr08 Position: 25753225 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 89.99% | 10.01% |
| All Indica | 770 | 83.51% | 16.49% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 84.11% | 15.89% |
| Indica II | 206 | 82.52% | 17.48% |
| Indica Intermediate | 199 | 83.42% | 16.58% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825753225 | G->A | INTERGENIC | None |