Detailed information of SNP:
|
SNP ID:
sf0825778339(Gbrowse)
Chromosome: chr08 Position: 25778339 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 88.14% | 11.86% |
| All Indica | 797 | 86.95% | 13.05% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825778339 | G->A | INTERGENIC | None |