Detailed information of SNP:
|
SNP ID:
sf0825813754(Gbrowse)
Chromosome: chr08 Position: 25813754 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 90.97% | 9.03% |
| All Indica | 792 | 84.09% | 15.91% |
| All Japonica | 491 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 72.36% | 27.64% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 331 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825813754 | G->C | INTERGENIC | None |