Detailed information of SNP:
|
SNP ID:
sf0825821623(Gbrowse)
Chromosome: chr08 Position: 25821623 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 92.03% | 7.97% |
| All Indica | 791 | 85.84% | 14.16% |
| All Japonica | 491 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 76.36% | 23.64% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 331 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825821623 | G->A | INTERGENIC | None |