Detailed information of SNP:
SNP ID:
sf0825884800(Gbrowse)
Chromosome: chr08 Position: 25884800 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1414 | 54.88% | 45.12% |
All Indica | 794 | 94.96% | 5.04% |
All Japonica | 497 | 1.01% | 98.99% |
Aus | 67 | 5.97% | 94.03% |
Indica I | 374 | 96.26% | 3.74% |
Indica II | 209 | 94.74% | 5.26% |
Indica Intermediate | 211 | 92.89% | 7.11% |
Temperate Japonica | 335 | 0.60% | 99.40% |
Tropical Japonica | 94 | 1.06% | 98.94% |
Japonica Intermediate | 68 | 2.94% | 97.06% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0825884800 | G->A | INTERGENIC | None |