Detailed information of SNP:
|
SNP ID:
sf0825889162(Gbrowse)
Chromosome: chr08 Position: 25889162 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 61.64% | 38.36% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825889162 | T->G | LOC_Os08g40919(LOC_Os08g40919.2) | INTRON |
| sf0825889162 | T->G | LOC_Os08g40919(LOC_Os08g40919.1) | UTR_3_PRIME |