Detailed information of SNP:
|
SNP ID:
sf0825945364(Gbrowse)
Chromosome: chr08 Position: 25945364 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 92.85% | 7.15% |
| All Indica | 792 | 88.13% | 11.87% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 212 | 69.34% | 30.66% |
| Indica Intermediate | 206 | 89.32% | 10.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825945364 | T->C | LOC_Os08g41020(LOC_Os08g41020.1) | Synonymous |