Detailed information of SNP:
|
SNP ID:
sf0825945535(Gbrowse)
Chromosome: chr08 Position: 25945535 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 63.60% | 36.40% |
| All Indica | 783 | 38.83% | 61.17% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 27 | 81.48% | 18.52% |
| Indica I | 365 | 35.62% | 64.38% |
| Indica II | 210 | 43.81% | 56.19% |
| Indica Intermediate | 208 | 39.42% | 60.58% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825945535 | G->A | INTERGENIC | None |