Detailed information of SNP:
|
SNP ID:
sf0825957369(Gbrowse)
Chromosome: chr08 Position: 25957369 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 92.22% | 7.78% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 80.04% | 19.96% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 72.84% | 27.16% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825957369 | A->G | LOC_Os08g41070(LOC_Os08g41070.1) | Non-Synonymous SNP |