Detailed information of SNP:
|
SNP ID:
sf0825969439(Gbrowse)
Chromosome: chr08 Position: 25969439 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.53% | 43.47% |
| All Indica | 798 | 96.37% | 3.63% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825969439 | C->T | LOC_Os08g41090(LOC_Os08g41090.1) | UTR_3_PRIME |