Detailed information of SNP:
|
SNP ID:
sf0825977977(Gbrowse)
Chromosome: chr08 Position: 25977977 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 96.75% | 3.25% |
| All Indica | 772 | 95.08% | 4.92% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 93.33% | 6.67% |
| Indica I | 361 | 96.40% | 3.60% |
| Indica II | 207 | 94.20% | 5.80% |
| Indica Intermediate | 204 | 93.63% | 6.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0825977977 | T->A | LOC_Os08g41110(LOC_Os08g41110.1) | INTRON |