Detailed information of SNP:
|
SNP ID:
sf0826025131(Gbrowse)
Chromosome: chr08 Position: 26025131 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 61.54% | 38.46% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826025131 | G->A | LOC_Os08g41210(LOC_Os08g41210.2) | INTRON |
| sf0826025131 | G->A | LOC_Os08g41210(LOC_Os08g41210.1) | INTRON |