Detailed information of SNP:
|
SNP ID:
sf0826114530(Gbrowse)
Chromosome: chr08 Position: 26114530 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 57.63% | 42.37% |
| All Indica | 796 | 27.64% | 72.36% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 37.17% | 62.83% |
| Indica II | 213 | 15.02% | 84.98% |
| Indica Intermediate | 209 | 23.44% | 76.56% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826114530 | C->T | INTERGENIC | None |