Detailed information of SNP:
|
SNP ID:
sf0826127699(Gbrowse)
Chromosome: chr08 Position: 26127699 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 54.85% | 45.15% |
| All Indica | 791 | 89.51% | 10.49% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 88.77% | 11.23% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 204 | 82.35% | 17.65% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826127699 | G->A | INTERGENIC | None |