Detailed information of SNP:
|
SNP ID:
sf0826131761(Gbrowse)
Chromosome: chr08 Position: 26131761 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 51.48% | 48.52% |
| All Indica | 799 | 87.98% | 12.02% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826131761 | C->T | LOC_Os08g41380(LOC_Os08g41380.1) | Synonymous |