Detailed information of SNP:
|
SNP ID:
sf0826144917(Gbrowse)
Chromosome: chr08 Position: 26144917 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 90.51% | 9.49% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 491 | 73.93% | 26.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 331 | 93.66% | 6.34% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826144917 | C->T | LOC_Os08g41400(LOC_Os08g41400.1) | INTRON |