Detailed information of SNP:
|
SNP ID:
sf0826147823(Gbrowse)
Chromosome: chr08 Position: 26147823 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 68.88% | 31.12% |
| All Indica | 797 | 52.07% | 47.93% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 50.40% | 49.60% |
| Indica II | 211 | 64.45% | 35.55% |
| Indica Intermediate | 211 | 42.65% | 57.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826147823 | T->C | LOC_Os08g41410(LOC_Os08g41410.1) | INTRON |