Detailed information of SNP:
|
SNP ID:
sf0826157205(Gbrowse)
Chromosome: chr08 Position: 26157205 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 87.52% | 12.48% |
| All Indica | 798 | 82.96% | 17.04% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 72.73% | 27.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826157205 | C->A | LOC_Os08g41430(LOC_Os08g41430.1) | Synonymous |