Detailed information of SNP:
|
SNP ID:
sf0826157690(Gbrowse)
Chromosome: chr08 Position: 26157690 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 88.17% | 11.83% |
| All Indica | 795 | 83.77% | 16.23% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 47.69% | 52.31% |
| Indica I | 373 | 73.46% | 26.54% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826157690 | G->A | LOC_Os08g41430(LOC_Os08g41430.1) | INTRON |