Detailed information of SNP:
|
SNP ID:
sf0826225596(Gbrowse)
Chromosome: chr08 Position: 26225596 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 82.22% | 17.78% |
| All Indica | 799 | 83.35% | 16.65% |
| All Japonica | 491 | 76.99% | 23.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 74.13% | 25.87% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 89 | 11.24% | 88.76% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826225596 | G->A | INTERGENIC | None |