Detailed information of SNP:
|
SNP ID:
sf0826331044(Gbrowse)
Chromosome: chr08 Position: 26331044 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.50% | 38.50% |
| All Indica | 798 | 81.83% | 18.17% |
| All Japonica | 497 | 26.16% | 73.84% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 73.60% | 26.40% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826331044 | G->T | LOC_Os08g41720(LOC_Os08g41720.1) | INTRON |