Detailed information of SNP:
|
SNP ID:
sf0826356648(Gbrowse)
Chromosome: chr08 Position: 26356648 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 71.21% | 28.79% |
| All Indica | 797 | 99.37% | 0.63% |
| All Japonica | 497 | 25.55% | 74.45% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0826356648 | G->C | INTERGENIC | None |